PUBLICATIONS

Martin GT, Seymour DK, Gaut B (2021). CHH methylation islands: A nonconserved feature of grass genomes that is positively associated with transposable elements but negatively associated with genome-body methylation. Genome Biol Evol 13(8):evab144.

Muyle A, Ross-Ibarra J, Seymour DK, Gaut B (2021). Gene body methylation is under selection in Arabidopsis thaliana. Genetics 218(2):iyab061.

Muyle A, Seymour DK, Darzentas N, Primetis E, Gaut B and Bousios A (2021). Gene capture by transposable elements leads to epigenetic conflict in maize. Mol Plant 14:237-252.

Seymour DK and Gaut B (2019). Phylogenetic shifts in gene body methylation correlate with gene expression and reflect trait conservation. Mol Biol Evol 37:31-43.

Gaut B, Miller A, Seymour DK (2019). Living with two genomes: Grafting and its implications for plant genome-to-genome interactions, phenotypic variation, and evolution. Annu Rev Genet 53 53:195-215.

Roessler K, Muyle A, Diez CM, Gaut GRJ, Bousios A, Stitzer M, Seymour DK, Doebley JF, Liu Qingpo, Gaut B (2019). The genome-wide dynamics of purging during selfing in maize. Nat Plants 5:980-990.

Exposito-Alonso M, 500 Genomes Field Experiment Team, Burbano HA, Bossdorf O, Nielson R, Weigel D (2019). Natural selection on the Arabidopsis thaliana genome in present and future climates. Nature 573:126-129.

Vondras A, Minio A, Blanco-Ulate B, Figueroa-Balderas R, Penn M, Zhou Y, Seymour DK, Zhou Y, Liang D, Espinoza L, Anderson M, Walker MA, Gaut B, Cantu D (2019). The genomic diversification of grapevine clones. BMC Genomics 20:972.

Seymour DK, Chae E, Ariöz BI, Koenig D, Weigel D (2019). Transmission ratio distortion is frequent in Arabidopsis thaliana controlled crosses. Heredity 122:294-304.

Gaut B, Seymour DK, Liu Q, Zhou Y (2019). Demography and its effects on genomic variation in crop domestication. Nat Plants 4:512-520.

Takuno S, Seymour DK, Gaut BS (2017) The evolutionary dynamics of orthologs that shift in gene body methylation between Arabidopsis species. Mol Biol Evol 34:1479-1491.

Seymour DK, Becker C (2017). The causes and consequences of DNA methylome variation in plants. Curr Opin Plant Biol 36:56-63.

Filiault D, Seymour DK, Maruthachalam R, Maloof JN (2017). The generation of doubled haploid lines for QTL mapping. Plant Genomics: Methods and Protocols 39-57.

Rowan BA, Seymour DK, Chae E, Lundberg D, Weigel D (2017). Methods for genotyping-by-sequencing. Genotyping: Methods and Protocols 221-242.

Seymour DK*, Chae E*, Grimm D*, Martín-Pizzaro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt K, Koenig D, Weigel D (2016). The genetic architecture of non-additive inheritance in Arabidopsis thaliana hybrids. Proc Natl Acad Sci USA 46:E7317-E7326.

Karlsson P, Christie MD, Seymour DK, Wang H, Wang X, Hagmann J, Kulcheski F, Manavella P (2015). KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1. Proc Natl Acad Sci USA 112:14096-14101.

Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K (2015). Improving the annotation of Arabidopsis lyrata using RNA-seq data. PLoS One 10:e0137391.

Seymour DK*, Koenig D*, Hagmann J, Becker C, Weigel D (2014). Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. PLoS Genet 10:e1004785.

Rugnone ML, Faigón Soverna A, Sanchez SE, Schlaen RG, Hernando CE, Seymour DK, Mancini E, Chernomoretz A, Weigel D, Más P, Yanovsky MJ (2013). LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Proc Natl Acad Sci USA 110:12120-12125.

Seymour DK, Filiault DL, Henry IM, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SW, Maloof JN (2012). Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proc Natl Acad Sci USA 109:4227-4232.

Sandlin K, Prothro J, Heesacker A, Khalilian N, Okashah R, Ziang W, Bachlava E, Caldwell DG, Taylor CA,Seymour DK, White V, Chan E, White C, Safran D, Graham E, Knapp S, McGregor C (2012). Comparative mapping in watermelon [Citrullus lanatus (Thunb.) Matsum. et Nakai]. Theor Appl Genet 125:1603-1618.